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Research Article

Glutamate Dehydrogenase from Thermus thermophilus Is Activated by AMP and Leucine as a Complex with Catalytically Inactive Adenine Phosphoribosyltransferase Homolog

Takeo Tomita, Hajime Matsushita, Ayako Yoshida, Saori Kosono, Minoru Yoshida, Tomohisa Kuzuyama, Makoto Nishiyama
Michael Y. Galperin, Editor
Takeo Tomita
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
bCollaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan
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Hajime Matsushita
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
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Ayako Yoshida
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
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Saori Kosono
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
bCollaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan
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  • ORCID record for Saori Kosono
Minoru Yoshida
bCollaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan
cDepartment of Biotechnology, The University of Tokyo, Tokyo, Japan
dRIKEN Center for Sustainable Resource Science, Saitama, Japan
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Tomohisa Kuzuyama
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
bCollaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan
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Makoto Nishiyama
aBiotechnology Research Center, The University of Tokyo, Tokyo, Japan
bCollaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan
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Michael Y. Galperin
NCBI, NLM, National Institutes of Health
Roles: Editor
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DOI: 10.1128/JB.00710-18
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ABSTRACT

Glutamate dehydrogenase (GDH) from a thermophilic bacterium, Thermus thermophilus, is composed of two heterologous subunits, GdhA and GdhB. In the heterocomplex, GdhB acts as the catalytic subunit, whereas GdhA lacks enzymatic activity and acts as the regulatory subunit for activation by leucine. In the present study, we performed a pulldown assay using recombinant T. thermophilus, producing GdhA fused with a His tag at the N terminus, and found that TTC1249 (APRTh), which is annotated as adenine phosphoribosyltransferase but lacks the enzymatic activity, was copurified with GdhA. When GdhA, GdhB, and APRTh were coproduced in Escherichia coli cells, they were purified as a ternary complex. The ternary complex exhibited GDH activity that was activated by leucine, as observed for the GdhA-GdhB binary complex. Furthermore, AMP activated GDH activity of the ternary complex, whereas such activation was not observed for the GdhA-GdhB binary complex. This suggests that APRTh mediates the allosteric activation of GDH by AMP. The present study demonstrates the presence of complicated regulatory mechanisms of GDH mediated by multiple compounds to control the carbon-nitrogen balance in bacterial cells.

IMPORTANCE GDH, which catalyzes the synthesis and degradation of glutamate using NAD(P)(H), is a widely distributed enzyme among all domains of life. Mammalian GDH is regulated allosterically by multiple metabolites, in which the antenna helix plays a key role to transmit the allosteric signals. In contrast, bacterial GDH was believed not to be regulated allosterically because it lacks the antenna helix. We previously reported that GDH from Thermus thermophilus (TtGDH), which is composed of two heterologous subunits, is activated by leucine. In the present study, we found that AMP activates TtGDH using a catalytically inactive APRTh as the sensory subunit. This suggests that T. thermophilus possesses a complicated regulatory mechanism of GDH to control carbon and nitrogen metabolism.

FOOTNOTES

    • Received 14 November 2018.
    • Accepted 22 April 2019.
    • Accepted manuscript posted online 29 April 2019.
  • Supplemental material for this article may be found at https://doi.org/10.1128/JB.00710-18.

  • Copyright © 2019 American Society for Microbiology.

All Rights Reserved.

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Glutamate Dehydrogenase from Thermus thermophilus Is Activated by AMP and Leucine as a Complex with Catalytically Inactive Adenine Phosphoribosyltransferase Homolog
Takeo Tomita, Hajime Matsushita, Ayako Yoshida, Saori Kosono, Minoru Yoshida, Tomohisa Kuzuyama, Makoto Nishiyama
Journal of Bacteriology Jun 2019, 201 (14) e00710-18; DOI: 10.1128/JB.00710-18

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Glutamate Dehydrogenase from Thermus thermophilus Is Activated by AMP and Leucine as a Complex with Catalytically Inactive Adenine Phosphoribosyltransferase Homolog
Takeo Tomita, Hajime Matsushita, Ayako Yoshida, Saori Kosono, Minoru Yoshida, Tomohisa Kuzuyama, Makoto Nishiyama
Journal of Bacteriology Jun 2019, 201 (14) e00710-18; DOI: 10.1128/JB.00710-18
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KEYWORDS

AMP
Thermus thermophilus
adenine phosphoribosyltransferase
allosteric regulation
glutamate dehydrogenase
protein-protein interaction

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