Table 3.

Localization and description of ORFs and noncoding elements in pMT1

ORF or noncoding elementPosition no.Size (amino acid residues)Strand or directionDescription (homologue by BLAST)
ORFs
 187–1109340DirectTransposase
 21109–1888259DirectTransposase
 32022–2618198ComplementSimilar to hypotheticalE. coli protein
 42932–5514860ComplementSimilar to tail fiber protein gp37
 55901–6518205ComplementUnknown
 66571–110491,492ComplementPutative protein, similar to lambda host-specific protein J and Northern European squid neurofilament-like protein
 711188–11739183ComplementUnknown
 811763–12521252ComplementSimilar to hypotheticalCoxiella burnetii protein (motif: RGD cell attachment site)
 912553–13251232ComplementSimilar to phage lambda minor tail protein L
 1013341–13676111ComplementUnknown
 1113718–182951,525ComplementPutative protein, similar to hypothetical Haemophilus influenzae protein HI1514
 1218653–18970105ComplementUnknown
 1319030–19776248ComplementUnknown
 1419851–20207118ComplementUnknown (Block hit: complement C1Q domain signature)
 1520236–20616126ComplementUnknown (Block hit: NSF attachment protein)
 1620700–21044114ComplementUnknown (Block hit: geminivirus AR1 coat protein)
 1721142–21975277ComplementUnknown (Block hit: histone H5 signature)
 1821975–2227499ComplementUnknown
 1922453–22884143ComplementSimilar to glucan endo-1,3-β-d-glucosidase
 2023190–24065291ComplementUnknown
 2124092–24409105ComplementUnknown
 2224537–24977146ComplementUnknown
 2325015–26253412ComplementUnknown
 2426623–27831402ComplementUnknown (motif: ATP/GTP binding motif A [P loop])
 2527882–28523213ComplementUnknown
 2628719–2898588ComplementUnknown (motif: RGD cell attachment site)
 2728995–29885296ComplementUnknown
 2830138–30776212ComplementSimilar to ABC transporter (motif: ATP/GTP binding motif A [P loop])
 2930773–31441222ComplementUnknown (motif: aminoacyl-RNA synthetase class II, signature 2)
 3031441–32121226ComplementUnknown
 3132285–33763492DirectUnknown
 3233766–3404492DirectUnknown
 3334269–3452685DirectUnknown
 3434531–35058175DirectSimilar to S. typhimurium repressor of phase 1 flagellin gene
 3535382–36032216DirectUnknown
 3636982–37464160ComplementUnknown
 3737669–3795093ComplementUnknown
 3838797–39384195ComplementUnknown
 3940132–42015627ComplementUnknown (motifs: ABC transporter, aminoacyl-tRNA synthetase class II signature 2, ATP/GTP binding motif A [P loop])
 4042278–43231317ComplementUnknown
 4145161–4538574ComplementUnknown
 4246550–47614354DirectSimilar to E. coli replication protein A (repA)
 4348184–4838466ComplementUnknown
 4448396–4865686ComplementUnknown
 4549291–4958798ComplementUnknown
 4650211–50996261ComplementUnknown
 4751336–52412358ComplementSimilar torecA (motif: ATP/GTP binding motif A [P loop])
 4852681–53550289ComplementSimilar toStreptococcus pneumoniae DNA Pol Ia
 4953686–54714342ComplementUnknown (motif: RGD cell attachment site) (Block hit: T. cruzi P2 protein signature)
 5054834–55265143ComplementUnknown
 5155810–56373187DirectUnknown
 5256403–56846147ComplementUnknown
 5356843–602501135ComplementSimilar to DNA Pol III alpha subunit
 5460548–61783411ComplementSimilar to CobS protein
 5561881–64235784ComplementSimilar to CobT protein
 5667074–67588175ComplementF1 capsule antigen
 5767669–70170833ComplementF1 capsule anchoring protein
 5870195–70971258Complement caf1M
 5971299–72204301Direct caf1R
 6072719–73024101ComplementUnknown
 6173545–74582347ComplementSimilar to DNA ligase
 6274658–75437259ComplementTransposase
 6375437–76459340ComplementTransposase
 6476861–7711885ComplementUnknown
 6577419–78048209ComplementUnknown
 6679222–80430402DirectTransposase
 6780899–81921340DirectTransposase
 6882120–82437105ComplementSimilar to E. coli yhgA
 6982617–82988123ComplementSimilar to hypothetical protein
 7083297–83752151DirectSimilar to E. coli hypothetical protein and reverse transcriptase-like protein
 7183997–85595532ComplementMurine toxin
 7287149–8734063DirectUnknown
 7387363–88220285ComplementPutative protein, similar to E. coli yhgA
 7490045–91250401DirectSimilar to phage P7parA
 7591247–92218323DirectSimilar to phage P7 parB
 7694893–95534213DirectSimilar to adenine DNA methyltransferase
 7795766–96185139DirectUnknown (Block hit: NSF attachment site)
 7896239–97018259DirectUnknown
 7997417–97923168DirectSimilar to antirestriction protein
 8098635–9886576DirectSimilar to E. coli hypothetical protein
 8198938–100947669DirectSimilar toRhizobium meliloti protein and S. sonnei protein
Noncoding elements
1–1954ForwardIS100
38040–38757ReverseIS200
46565–47425ForwardIncF plasmid RepFIB replicon
74592–76545ReverseIS100
  • a Pol, polymerase.