Table 3.

Alignment of lux boxes for V. fischeri QSR genes

GeneStrainlux box sequenceSource or reference
luxIMJ-1ACCTGTAGGA TCGTACAGGT24
ATCCACCTGTAGGA TCGTACAGGT9
ES114AGCTGTAGGA TGGTACAGGT35
H905GGCTGTAGGA TAGTACAGGT36
EM30GCCTGTAGGA TCGTACAGGT36
ainSMJ-1TAATGAGTTA TCAATCAATA33
qsrPMJ-1aACCTGTAATA AGTTACAGGAThis study
ES114bACCTGTAATA AACGACAGGAThis study
ribBMJ-1aACCTGCAATA ATTTACAGTAThis study
ConsensuscACCTGTAGGAT GTACAGGT
  • a From Nalr derivative strain MJ-100.

  • b From Rifr derivative strain ESR1.

  • c Greater than 50% identity; underlining denotes an identical nucleotide at that position in seven or more of the nine listed sequences.