Table 1.

Linear plasmid pCLP gene analysis

ORF no.aPredicted protein size (aa)Identity (%) Closest homolog (species and strain or plasmid) Known or putative function Accession no.
1424 86 Rv3128c (M. tuberculosis H37Rv) Unknown C70990
2 98 70 pemI (M. morganii R446b)Maintenance AAC82515
71 pemI(E. coli R100) Maintenance BAA78897
3 8487 pemK (M. morganii R446b)Maintenance AAC82516
86 pemK(E. coli R100) Maintenance BAA78898
8 27180 Rv2813 (M. tuberculosis H37Rv) Secretion H70690
9b 318 86 Rv2812 (M. tuberculosis H37Rv) Transposase (IS1604) G70690
11 215 57 parA (P. alcaligenes) Partition AAD40334
14 351 65 rep (M. fortuitum) Replication CAB43095
16 195 71Rv0921 (M. tuberculosis H37Rv) Resolvase (IS1535) A70583
63 Rv2792c (M. tuberculosis H37Rv) Resolvase (IS1602) G70884
17 486 58 Rv0922 (M. tuberculosis H37Rv)Transposase (IS1535) B70583
53Rv2791c (M. tuberculosis H37Rv) Transposase (IS1602) F70884
  • a ORF4 to -7, -10, -12, -13, -15, -18, and -19 have no significant similarities in the databases.

  • b No valid start codon.