Table 3.

Truncated and/or fragmented genes in S. pneumoniae R6

Gene no.Gene nameaDescription
spr0105ABC-NBP&MSP-truncationABC transporter similar to comA
spr0106ABC-NBP&MSP-truncationABC transporter similar tocomA
spr0223ABC-SBP-truncationABC transporter substrate-binding protein (iron transport)
spr0224ABC-SBP-truncationABC transporter substrate-binding protein (iron transport)
spr0299Conserved hypothetical
spr0300Conserved hypothetical
spr0324Transposase G-truncationUncharacterized transposase
spr0346 alkD-truncationDNA alkylation repair enzyme
spr0347 alkD-truncationDNA alkylation repair enzyme
spr0349 cbpG-truncationCholine-binding protein G
spr0466Conserved hypothetical
spr0467Conserved hypothetical
spr0468Conserved hypothetical
spr0469Conserved hypothetical
spr0523Transposase H-truncationUncharacterized transposase
spr0535 glnQ-truncationABC transporter ATP-binding protein (glutamine)
spr0536 glnQ-truncationABC transporter ATP-binding protein (glutamine)
spr0610ABC-NBD-truncationABC transporter ATP-binding protein (unknown substrate)
spr0620ABC-SBP-truncationABC transporter substrate-binding protein (unknown substrate)
spr0621ABC-SBP-truncationABC transporter substrate-binding protein (unknown substrate)
spr0646 bgl-truncationPhospho-beta-gluco or galactosidase
spr0737Conserved hypothetical
spr0852 ald-truncationAlanine dehydrogenase
spr0853 ald-truncationAlanine dehydrogenase
spr0854 ald-truncationAlanine dehydrogenase
spr0910 phtE-truncationPneumococcal histidine triad protein E precursor
spr0957Relaxase-truncationTn5252, relaxase
spr0958Relaxase-truncationTn5252, relaxase
spr1033 serB-truncationPhosphoserine phosphatase
spr1077 lacX-truncationFunction unknown
spr1095 metY-truncation O-Acetylhomoserine sulfhydrylase
spr1096 metY-truncation O-Acetylhomoserine sulfhydrylase
spr1133 leuD-truncation3-Isopropylmalate dehydratase small subunit
spr1183ABC-NBD-truncationABC transporter ATP-binding protein (possibly multidrug efflux)
spr1186 npl-truncation N-Acetylneuraminate lyase subunit
spr1187 npl-truncation N-Acetylneuraminate lyase subunit
spr1285 spnIR-truncationType II restriction endonuclease, uncharacterized
spr1286 spnIR-truncationType II restriction endonuclease, uncharacterized
spr1378ABC-MSP-truncation
spr1379ABC-MSP-truncation
spr1380ABC-MSP-truncation
spr1381ABC-MSP-truncation
spr1520 npl-truncation N-Acetylneuraminate lyase subunit
spr1521 npl-truncation N-Acetylneuraminate lyase subunit
spr1683 galE-truncationUDP-galactose 4-epimerase
spr1734ABC-NBD-truncationABC transporter ATP-binding protein (unknown substrate)
spr1736ABC-NBD-truncationABC transporter ATP-binding protein (unknown substrate)
spr1772Conserved hypothetical
spr1871 pcp-truncationPyrrolidone carboxyl peptidase
spr1872 pcp-truncationPyrrolidone carboxyl peptidase
spr1900Conserved hypothetical
spr1955 arcA-truncationArginine deiminase
spr1956 arcA-truncationArginine deiminase
spr1984Transposase HUncharacterized transposase
spr1985Transposase HUncharacterized transposase
spr1989 glpD-truncationGlycerol 3-phosphate dehydrogenase
spr1990 glpD-truncationGlycerol 3-phosphate dehydrogenase
spr1999 clpC-truncationClass III stress response-related ATPase
spr2000 clpC-truncationClass III stress response-related ATPase
spr2036Conserved hypothetical
spr2037Conserved hypothetical
spr2038Conserved hypothetical
spr2039Conserved hypothetical
  • a Abbreviations: ABC-NBD, ABC transporter nucleotide binding domain; ABC-SBP, ABC transporter substrate-binding protein; ABC-MSP, ABC transporter membrane-spanning permease; ABC-NBD&MSP, ABC transporter nucleotide-binding domain and membrane-spanning permease.