TABLE 2.

Annotation of strain-specific sequencing traces

Protein BLASTX hit categoryNo. (%) of traces for strain:
1-602-164MSHCombined
P. aeruginosa, PAO1 genome32 (3.5)67 (4)34 (4)133 (3.9)
Elements from other P. aeruginosa strains
    PAGI-144 (4.8)5 (0.6)49 (1.4)
    O antigena164 (18)155 (9.3)12 (1.4)331 (9.7)
    Flagellin glycosylation island17 (1.9)17 (0.5)
    Other6 (0.7)51 (3.1)10 (1.2)67 (2.0)
Other Pseudomonas species20 (2.2)96 (5.7)27 (3.2)143 (4.2)
Xylella fastidiosa50 (5.5)122 (7.3)31 (3.7)203 (5.9)
Mezorhizobium loti25 (2.7)32 (1.9)15 (1.8)72 (2.1)
E. coli9 (1)42 (2.5)19 (2.3)70 (2)
Other bacteria76 (8.4)236 (14.1)43 (5.1)355 (10.4)
Mobile genetic elements (phage, plasmid)11 (1.2)60 (3.6)25 (3.0)96 (2.8)
Other2 (0.2)1 (0.1)3 (0.1)
Traces with no BLASTX hits454 (49.9)810 (48.5)622 (73.7)1,886 (55.1)
Total no. of high quality traces unaligned with PAO19101,6718443,425
  • a Traces in this category correspond to the O-antigen type of each strain; type O1 for strains 1-60 and MSH, and type O6 for strain 2-164.