TABLE 2.

Alignment of nucleotide sequences of putative YycF-regulated promoter regions

GeneSequenceaFunction
lytM*(SA0265) TGTAAT GACAATGTAAT...N158...ATG Peptidoglycan hydrolase
prs (SA0458) TGTAAT ATTAATGTAAT...N103...ATG Ribose-phosphate pyrophosphokinase
sdrD (SA0520) TGTTAC AGAAATGTAAT...N267...ATG Sialoprotein-binding protein
hu (SA1305) TGTAAT GCTTGTGTTAA...N74...ATG DNA-binding protein II
ebpS (SA1312) TGTAAA ATCATTGTAAT...N38...ATG Elastin-binding protein
phoP (SA1516) TGTAAA AAATGTGTAAA...N93...ATG Transcriptional regulatory protein
sak (SA1758) TGTTAA ATATT...N176...ATG Staphylokinase precursor
isaA* (SA2356) TGTAAA GAAAGTGTAAT...N156...ATG Immunodominant antigen A
opp-2B (SA1214) GTTACA CTGCAGTAACA...N265...ATG Oligopeptide transporter membrane permease domain
ndhF (SA0411) TTTACA AAATCTTTACA...N369...ATG NADH dehydrogenase
SA1221 TTTACA TTTTCTTAACA...N129...ATG Thioredoxin reductase
ssaA* (SA2093) ATTACA AAACGTTAACA...N136...ATG Staphylococcal secretory antigen
ATTACA AATTTGTAACA...N265...ATG
  • a The direct repeats of the potential YycF binding sites on either strand are shown in bold and indicated by arrows. Genes where direct binding by YycF was demonstrated are indicated by asterisks. The ssa gene promoter region contains two binding sites for YycF.