TABLE 2.

Alignment of nucleotide sequences of putative YycF-regulated promoter regions

GeneSequenceaFunction
lytM*(SA0265) TGTAAT GACAA TGTAAT ...N158...ATGPeptidoglycan hydrolase
prs (SA0458) TGTAAT ATTAA TGTAAT ...N103...ATGRibose-phosphate pyrophosphokinase
sdrD (SA0520) TGTTAC AGAAA TGTAAT ...N267...ATGSialoprotein-binding protein
hu (SA1305) TGTAAT GCTTG TGTTAA ...N74...ATGDNA-binding protein II
ebpS (SA1312) TGTAAA ATCAT TGTAAT ...N38...ATGElastin-binding protein
phoP (SA1516) TGTAAA AAATG TGTAAA ...N93...ATGTranscriptional regulatory protein
sak (SA1758) TGTTAA ATATT ...N176...ATGStaphylokinase precursor
isaA* (SA2356) TGTAAA GAAAG TGTAAT ...N156...ATGImmunodominant antigen A
opp-2B (SA1214) GTTACA CTGCA GTAACA ...N265...ATGOligopeptide transporter membrane permease domain
ndhF (SA0411) TTTACA AAATC TTTACA ...N369...ATGNADH dehydrogenase
SA1221 TTTACA TTTTC TTAACA ...N129...ATGThioredoxin reductase
ssaA* (SA2093) ATTACA AAACG TTAACA ...N136...ATGStaphylococcal secretory antigen
ATTACA AATTT GTAACA ...N265...ATG
  • a The direct repeats of the potential YycF binding sites on either strand are shown in bold and indicated by arrows. Genes where direct binding by YycF was demonstrated are indicated by asterisks. The ssa gene promoter region contains two binding sites for YycF.