TABLE 2.

FlhDC-dependent Salmonella genesa

Rank and gene namebRatiocRank and gene namebRatioc
1. fliC 0.03148. fliN 0.23
2. fljB 0.03449. fliI 0.26
3. flgK 0.04350. fliJ 0.28
4. cheA 0.04451. flhB 0.31
5. flgG 0.06052. fliP 0.36
6. fliA 0.05053. modC 0.41
7. flgD 0.05854. modA 0.36
8. fliD 0.06055. ycgR 0.38
9. cheW 0.07356. flgN 0.49
10. cheM 0.1057. STM31520.32
11. trg 0.08558. fliO 0.43
12. flgE 0.07259. spaO 0.50
13. flgL 0.07460. prgJ 0.47
14. motA 0.09261. modB 0.46
15. flgF 0.07962. STM31550.61
16. flgB 0.1063. prgH 0.38
17. cheZ 0.09564. fliE 0.58
18. aer 0.08965. sopB 0.34
19. cheY 0.09566. fimA 0.55
20. fliH 0.09767. flhA 0.53
21. cheR 0.1268. invJ 0.49
22. cheB 0.1269. invI 0.50
23. motB 0.1270. sipB 0.42
24. fliZ 0.1371. invG 0.42
25. tsr 0.1472. sipC 0.42
26. fliM 0.1373. STM11330.31
27. fliF 0.1474. invC 0.55
28. flgH 0.1475. hilD 0.53
29. fliL 0.1476. STM13280.57
30. fliB 0.1477. hilA 0.45
31. fliG 0.1678. sicA 0.54
32. fliS 0.1579. prgK 0.44
33. flgM 0.1580. prgI 0.55
34. 3138 0.1581. sprB 0.50
35. 2314 0.1582. 2787 0.40
36. flgC 0.1683. sipD 0.51
37. flgI 0.1784. flhE 0.55
38. flgJ 0.1685. hilC 0.46
39. STM32160.1686. STM40800.55
40. fljA 0.1987. yjcH 0.53
41. srfA 0.2188. invA 0.49
42. tcp 0.1989. sipA 0.57
43. srfB 0.2090. yjcG 0.53
44. yhjH 0.20 fliY d 0.57
45. srfC 0.20 fliR 0.81
46. flgA 0.22 fliQ 0.98
47. fliT 0.23
  • a The top 90 genes were ranked from 4 independent array data sets.

  • b The ranking in this table reflects their average ranking from all four data sets. Hence, some genes ranked higher than others, even though their overall FlhDC dependence was lower.

  • c The number represents the average ration of RNA in the flhDC deletion background to the wild-type LT2 strain.

  • d The effect of FlhDC on the fliY, fliQ and fliR genes, which did not make the top-90 cut, is also shown.