TABLE 3.

Genes significantly differentially regulated in hfq+ wild-type versus hfq mutant microarray expression analysis

Gene product typeGene(s)a
CarriercyoB, cyoC, cyoD, gltD
Partial informationyeaG, yjdA
EnzymeadhE, aldA, amn, aspS, atpA, atpB, atpD, atpE, atpF, atpG, carA, carB, gatY, gatZ, glmU, gyrB, hslV, lon, map, parE, pgk, ppiB, rnpA, thrA, thrB, thrC, truB, xseB, araB, aspC, cysK, degP, gdhA, lacA, lacZ, lpxD, mdh, mdoG, miaA, sthA
FactordnaK, efp, ffh, groL, groS, hslO, hslU, infB, priB, rdgC, tsf, rpoE, rseA, sufD, yfiA
Phage/ISnmpC, ompT
Unknown functionyhcN
RegulatoriscR
TransportergatA, gatB, gatC, lamB, malE, manX, manY, manZ, mgtA, ptsI, cysP, dppA, dppF, fepA, fhuE, fliY, glnH, kgtP, lacY, metQ, mscS, ompF, oppA, oppB, oppC, shiA, sstT
Structural componentfliC, rplA, rplD, rplP, rplV, rplY, rpmD, rpmE, rpmG, rpsF, rpsJ, rpsL, rpsS, rpsU
Carrier, predictedygcQ
Regulator, predictedyqjI, yrbA, htrG
Transporter, predictedrbsD, sdaC, fiu, sbmA, sufB, ybfM, yliB
  • a Only genes that were significantly differentially regulated and changed expression at least 1.5-fold are listed (120 genes in all). All genes that were significantly differentially regulated are listed in Table S1 in the supplemental material. Genes in boldface have mRNAs that decrease in hfq mutants; genes in regular typeface have mRNAs that increase in the hfq mutant.