TABLE 3.

ORFs in the middle and 3′ regions of ICEKp1

ORFProduct size (amino acids)LocationaHomologous protein(s)SourceAmino acid identitybAccession no.
No.DesignationStart siteStop siteNo. of matching amino acidsTotal no. of amino acids
1ORF12033625635645Transposase and inactivated derivativesY. pestis179188ZP_00797222
2ORF2633637136180IS100 ORF1Shigella dysenteriae6063ZP_406030
3ORF33003736836466Transposase and inactivated derivativesY. pestis297300ZP_01175356.1
4ORF41263793637556Hypothetical protein
5ORF5763837938609VagCSalmonella enterica7175ZP_271744.1
6ORF61383860639022VagDK. pneumoniae CG43135138NP_943352.1
7ORF7873904039303Hypothetical protein LV173K. pneumoniae CG435174NP_943463.1
8iroN7244163239458IroNE. coli UTI89686725ZP_540133.1
9iroB3714250443619IroBK. pneumoniae CG43362371NP_943394.1
10iroC12314370647401IroCK. pneumoniae CG4311981214NP_943393.1
11iroD4094750748736IroDK. pneumoniae CG43404409NP_943392.1
12pagO3045065549741PagOK. pneumoniae CG43275300NP_943390.1
13ORF131835127950728Hypothetical protein
14rmpA2105228651654Regulator of mucoid phenotypeK. pneumoniae CG43183210AAL25252.1
15ORF15545230052464Hypothetical protein
16ORF162175282853481Hypothetical protein LV256K. pneumoniae CG43175179NP_943388.1
17ORF17615430454119Transposase and inactivated derivativesY. pestis6161ZP_00797222.1
18ORF18775478955022Putative ATP/GTP-binding protein remnantY. pestis4666NP_995420
19virB12365509555805Pilx1/VirB1-like proteinE. coli ECOR31232236AAP70283.1
20virB2975580556098VirB2-like proteinE. coli ECOR319797AAP70284.1
21virB3-virB 49125611158849Pilx3-4/VirB3-4-like proteinE. coli ECOR31897912AAP70302.1
22virB52345886759571Pilx5/VirB5-like proteinE. coli ECOR31224229AAP70285.1
23virB63595982060899Pilx6/VirB6-like proteinE. coli ECOR31296354AAP70286.1
24virB82276111561798Type IV secretion system VirB8 componentY. pestis226227NP_995427.1
25virB93026179562703Type IV secretory pathway VirB9 componentY. pestis293301NP_995428.1
26virB104166274763997Pilx10/VirB10-like proteinE. coli ECOR31402416AAP70288.1
27virB113416398765012Type IV secretory pathway VirB11 componentY. pestis335341NP_995430.1
28ORF281326500965407Hypothetical protein YP_pCRY17Yersinia pestis118132NP_995431.1
29ORF291006544365745YggA-like proteinE. coli ECOR3169101AAP70290.1
30ORF301016578866093UnknownE. coli ECOR3183101AAP70307.1
31ORF311006620466506UnknownE. coli ECOR3199100AAP70308.1
32mobB6296677368662MobB-like proteinE. coli ECOR31607629AAP70291.1
33mobC2486867269418MobC-like proteinE. coli ECOR31212245AAP70292.1
34ardC3157056169614Antirestriction proteinE. coli ECOR31290315AAP70295.1
35ORF352717236171546Hypothetical protein
36ORF361157300972662Hypothetical protein Nham_1368N. hamburgensis5093ZP_576652.1
37ORF374647440373009UBA/THIF-type NAD/flavin adenine dinucleotide binding foldN. hamburgensis235459ZP_576653.1
38ORF383757550374376Hypothetical protein Nham_1370N. hamburgensis176353ZP_576654.1
39ORF391827614675598Conserved hypothetical proteinGram-negative bacterium93175AAQ10297.1
40ORF403677729276189Hypothetical protein Shewmr7DRAFT_1704Shewanella sp. strain MR-7147365ZP_00855252.1
  • a Nucleotide position in the GenBank accession no. AB298504 sequences.

  • b Determined by BLAST-P analysis.