Table 3.

Numbers of orthologous genes related to DNA repaira

Species (strain)Genome size (Mb)GC content (%)Phylum or classNo.
TotaladaAalkAalkBdinPexoA (xth)fpgligAmfdmpgmutHmutLmutSmutTmutYnfonthogtpcrAphrpolApriAradAradCrecArecDrecFrecGrecJrecNrecOrecQrecRrecUrexArexBruvAruvBruvCtag1umuCunguvrAuvrBuvrC
Alkaliphilus oremlandii (OhILAs)3.1236.3Firmicutes4312011011101211112201111111111111021111101111
Clostridium acetobutylicum (ATCC 824)3.9430.9Firmicutes4001011021101201111201111121131111021110000111
Clostridium difficile (630)4.2929.1Firmicutes3801011011101200112201111111111111021111001111
Clostridium novyi (NT)2.5528.9Firmicutes3501010011101210110201111111121111021110000111
Clostridium thermocellum (ATCC 27405)3.8439.0Firmicutes3601011011001200011201112121121101021111000111
Eubacterium eligens (ATCC 27750)2.1437.7Firmicutes3901000011011210110301111221111111121110011111
Streptococcus mutans (UA159)2.0336.8Firmicutes3700011111101211011101111111111101121110101111
Streptococcus pneumoniae (TIGR4)2.1639.7Firmicutes3300011111001101011101101111111101121110101111
Streptococcus pyogenes (SF370)1.8538.5Firmicutes3600011111001211010111111111111101121110101111
Anoxybacillus flavithermus (WK1)2.8541.8Firmicutes3801000111001211111212110111111111121110001111
Bacillus subtilis (168)4.2243.5Firmicutes4912021111101211112202111111121121121110021111
Geobacillus kaustophilus (HTA426)3.5452.1Firmicutes3801000111001221111101111111121111121110001111
Listeria monocytogenes (EGD-e)2.9438.0Firmicutes4920011111101211113112111111111121121110112112
Staphylococcus aureus (N315)2.8132.8Firmicutes4100010111101201111112111111111121121110111111
Enterococcus faecalis (V583)3.3637.5Firmicutes4710011111101201111111111111111121221110151111
Lactobacillus acidophilus (NCFM)1.9934.7Firmicutes3700012111101200011101111111111111121110101111
Lactobacillus brevis (ATCC 367)2.2946.2Firmicutes4100011111101221111101111111111121121110101111
Lactobacillus casei (ATCC 334)2.9046.6Firmicutes4500011111101221111101111221111121121110211111
Lactobacillus delbrueckii subsp. bulgaricus (ATCC 11842)1.8649.7Firmicutes3500011111101200010101111111111111121110011111
Lactobacillus fermentum (IFO 3956)2.1051.5Firmicutes3600001111101210001101111111111111121110111111
Lactobacillus gasseri (ATCC 33323)1.8935.3Firmicutes3900012111101200012101111111111111121110111111
Lactobacillus helveticus (DPC 4571)2.0837.1Firmicutes3600011111101200011101111111111111121110101111
Lactobacillus johnsonii (NCC 533)1.9934.6Firmicutes3900012111101210012101111111111111121110101111
Lactobacillus plantarum (WCFS1)3.3544.5Firmicutes4200011111101221111101111111111121121110111111
Lactobacillus reuteri (JCM 1112)2.0438.9Firmicutes3800002111101210011101111111111111121110111111
Lactobacillus rhamnosus (GG)3.0146.7Firmicutes4500011111101221111101111221111121121110211111
Lactobacillus sakei (23K)1.8841.3Firmicutes4000011111101201111101111111111121121110111111
Lactobacillus salivarius (UCC118)1.8332.9Firmicutes3500011111001200011101111111111111121110101111
Leuconostoc mesenteroides (ATCC 8293)2.0437.7Firmicutes4000011111001221001111111111111111121110121111
Lactococcus lactis subsp. cremoris (MG1363)2.5335.8Firmicutes4010011111001241011101111111111111121110001111
Lactococcus lactis subsp. lactis (IL1403)2.3735.3Firmicutes4110011111001231011101111111111111121110111111
Oenococcus oeni (PSU-1)1.7837.9Firmicutes3300001111000130001101110111111101121110111111
Erysipelothrix rhusiopathiae (Fujisawa)1.7936.6Firmicutes3400001111001211111101101101111111100111111111
Acholeplasma laidlawii (PG-8A)1.5031.9Mollicutes3300010111001201111111101111101101100110121111
Candidatus Phytoplasma mali” (AT)0.6021.4Mollicutes1600000110000010200101100100100101100110001000
Candidatus Phytoplasma australiense”0.8827.4Mollicutes1100000110000010100101100000000000000000001111
Aster yellows witches' broom phytoplasma (AYWB)0.7126.9Mollicutes1100000110000010100101100000000000000000001111
Onion yellows phytoplasma (OY-M)0.8527.8Mollicutes1100000110000010100101100000000000000000001111
Mesoplasma florum (L1; ATCC 33453)0.7927.0Mollicutes1700010110000000100102000000000101100110101111
Mycoplasma agalactiae (PG2)0.8829.7Mollicutes1600010110000000100101000000000101200110001111
Mycoplasma arthritidis (158L3-1)0.8230.7Mollicutes1600010110000000101101000000000101100110001111
Mycoplasma conjunctivae (HRC/581T)0.8528.5Mollicutes1600010110000000100111000000000101100110001111
Mycoplasma gallisepticum (R)1.0031.5Mollicutes1500010110000000100101000000000101100110001111
Mycoplasma genitalium (G37)0.5831.7Mollicutes1300010110000000100101000000000000100110001111
Mycoplasma hyopneumoniae (232)0.8928.6Mollicutes1500010110000000100101000000000101100110001111
Mycoplasma mobile (163K)0.7825.0Mollicutes1500010110000000100201000000000001100110001111
Mycoplasma capricolum (ATCC 27343)1.0123.8Mollicutes1500010110000000100102000000000101100100001111
Mycoplasma mycoides (PG1)1.2124.0Mollicutes1600010110000000100102000000000101100110001111
Mycoplasma penetrans (HF-2)1.3625.7Mollicutes1700010110000000101101000000000101100110101111
Mycoplasma pneumoniae (M129)0.8240.0Mollicutes1400010110000000100201000000000000100110001111
Mycoplasma pulmonis (UAB CTIP)0.9626.6Mollicutes1800010120000000101201000000000101100110001111
Mycoplasma synoviae (53)0.8028.5Mollicutes1500010110000000100101000000000101100110001111
Ureaplasma parvum (ATCC 700970)0.7525.5Mollicutes1500010110000000100101000000000101100110001111
Ureaplasma urealyticum (ATCC 33699)0.8725.8Mollicutes1400010110000000100101000000000101000110001111
Esherichia coli (K-12 MG1655)4.6450.8Proteobacteria4411111111011111112211111111111111011111111111
Fusobacterium nucleatum (ATCC 25586)2.1727.2Fusobacteria3000011011001200011101111101121111000111001111