TABLE 3.

Numbers of CDSs and orthologous clusters for individual S. pneumoniae strains

Strain nameGenome size (kb)No. of CDSsNo. of orthologous clustersNo. of unique clusters% Noncore clustersa
INV2002,2002,2591,8502821.4
PAT6420135Unknown2,5001,9131024
R62,0382,2741,925324.5
D392,0002,3041,940325
CGSSp18BS742,0332,3541,9551325.6
CGSSp3BS712,0272,3311,960725.8
CGSSp11BS702,0442,3361,9862526.8
TIGR42,1602,4101,993127
INV104B2,2002,5082,0127427.7
OXC1412,2002,6632,0146727.8
CGSSp9BS682,0902,3972,0213728
CGSSp23BS722,0532,4112,0224128.1
CGSSp19BS752,0692,4322,0314028.4
CGSSp6BS732,1192,4342,0565529.3
CGSSp14BS692,0842,7632,0686129.7
23F2,2002,4282,0694329.7
TIGR670-6B2,1002,6412,1576832.6
  • a Calculated as (total clusters in the strain − 1,454 core clusters)/(total clusters in the strain).