TABLE 1.

H37Rv strains sequenced in this study

StrainATCC no.SourceSpoligotypeaSequencingCoverage (×)Completion (%)
H37RvAE27294William Jacobs (Albert Einstein College of Medicine)777777475760771Single end63.399.98
H37RvMA27294Chris Sassetti (University of Massachusetts)777777475760771Paired end62.399.22
H37RvCO27294Karen Dobos (Colorado State University)777777477760771Paired end79.298.77
H37RvHA27294Sarah Fortune (Harvard University)777777475760771Single end29.499.37
H37RvLP25618Tanya Parish (IDRI, Seattle, WA)777777477760771Paired end151.399.00
H37RvJO25618Valerie Mizrahi (Johannesburg, South Africa)777777477760771Paired end49.798.78
  • a Spoligotype inferred from matching sequence data (36-bp reads) to spacer oligonucleotides. For comparison, the spoligotype of the H37Rv reference strain is 777777477760771.