TABLE 2.

Differentially expressed genes in CF39s and CF39wt

PA no.GeneChange (fold)Functiona
PA00832.48T6SS HSI-I conserved hypothetical protein
PA00842.94T6SS HSI-I conserved hypothetical protein
PA0085hcp12.70T6SS HSI-I Hcp1
PA00882.13T6SS HSI-I hypothetical protein
PA0090clpV12.29T6SS HSI-I probable ClpV1
PA0091vgrG1a2.02T6SS HSI-I VgrG1a
PA0095vgrG1b2.28T6SS HSI-I VgrG1b
PA0285−2.04Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains)
PA08612.37Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains)
PA1079flgD−2.26Flagellar basal body rod modification protein FlgD
PA1081flgF−2.23Flagellar basal body rod protein FlgF
PA1097fleQ−2.00Transcriptional regulator FleQ
PA1105fliJ−2.50Flagellar protein FliJ
PA1168225.21Hypothetical protein
PA1169261.52Probable lipoxygenase
PA1431rsaL2.61Regulatory protein RsaL
PA16563.14T6SS HSI-II hypothetical protein
PA16575.28T6SS HSI-II conserved hypothetical protein
PA16585.86T6SS HSI-II conserved hypothetical protein
PA16595.62T6SS HSI-II hypothetical protein
PA16604.74T6SS HSI-II hypothetical protein
PA16612.22T6SS HSI-II hypothetical protein
PA1662clpV22.90T6SS HSI-II probable ClpV2
PA16632.15T6SS HSI-II probable transcriptional regulator
PA16642.59T6SS HSI-II hypothetical protein
PA16673.45T6SS HSI-II hypothetical protein
PA16682.83T6SS HSI-II hypothetical protein
PA1669icmF22.23T6SS HSI-II IcmF2
PA1871lasA8.84LasA protease precursor
PA2193hcnA33.91Hydrogen cyanide synthase HcnA
PA2194hcnB25.20Hydrogen cyanide synthase HcnB
PA2195hcnC24.31Hydrogen cyanide synthase HcnC
PA2231pslA2.04PslA
PA2232pslB2.00Probable phosphomannose isomerase/GDP-mannose pyrophosphorylase
PA2233pslC2.40Probable glycosyl transferase
PA2235pslE2.42Hypothetical protein
PA2239pslI2.31Probable transferase
PA2361icmF32.62T6SS HSI-III IcmF3
PA23642.11T6SS HSI-III hypothetical protein
PA23653.24T6SS HSI-III conserved hypothetical protein
PA23669.28T6SS HSI-III conserved hypothetical protein
PA2367hcp32.26T6SS HSI-III Hcp3
PA23682.59T6SS HSI-III hypothetical protein
PA2371clpV32.21T6SS HSI-III ClpV3
PA23726.69T6SS HSI-III hypothetical protein
PA24408.45Hypothetical protein
PA244112.80Hypothetical protein
PA25676.29Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains)
PA2652−2.34Probable chemotaxis transducer
PA2653−6.19Probable transporter
PA3058pelG4.35PelG
PA3059pelF5.73PelF
PA3060pelE7.39PelE
PA3061pelD11.47PelD
PA3062pelC15.74PelC
PA3063pelB5.08PelB
PA3064pelA5.06PelA
PA3361lecB8.08Fucose-binding lectin PA-IIL
PA3476rhlI2.11Autoinducer synthesis protein RhlI
PA3477rhlR2.39Transcriptional regulator RhlR
PA3478rhlB4.73Rhamnosyltransferase chain B
PA3479rhlA11.00Rhamnosyltransferase chain A
PA3704wspE−2.00Probable chemotaxis sensor/effector fusion protein
PA3705wspD−2.87Hypothetical protein
PA3706wspC−2.27Probable protein methyltransferase
PA3707wspB−2.00Hypothetical protein
PA3708wspA−2.28Probable chemotaxis transducer
PA3724lasB10.46Elastase LasB
PA4307pctC−8.17Chemotactic transducer PctC
PA46246.22Hypothetical protein
PA46257.60Hypothetical protein
PA4843−3.04Putative diguanylate cyclase (GGDEF domain)
  • a T6SS, type VI secretion system.