TABLE 3.

Similarity between the nucleotide sequences of SfV and E. coli prophages

SfVE. coli K-12
Nucleotide positions (total no. bp)Predicted ORFsaProphagec (accession no. or refs.)Homologous nucleotide positionsPredicted ORF(s)a% identify at nucleotide level
1152-2237 (1085)(orf-2)e14 (AE000214 )7807-8892 b1149 95
15305-16998 (1693)(orf-19), orf-20, (orf-21)9545-11238 b1152, b1153, (b1154)96
20514-19074 (1440) attP, gtrA, gtrB 7200-8640 b1148b b1149b 82
24838-25022 (184)Between orf-32 and orf-334687-4871(b1142b), (b1143b)97
25573-27230 (1657) cl cro, orf-36, (orf-37)5556-7213 b1145, b1146, b1147 94
17024-16733 (291)(orf-21)KpLE1 (AE000324 )1251-1542(b2355)92
24645-21981 (2664) orf-32, orf-31, orf-30, orf-29, orf-28 2994-5658 b2359, b2360, b2361, b2362, b2363 96
29880-29041 (839)(orf-39), orf-40, (orf-41)1540-2379(b2358), b2357, (b2356)95
20515-19090 (1425) attP, gtrA, gtrB KpLE1 (AE000323 ) (2, 4)7201-8626 b2350, b2351 82
33679-32464 (1215)(orf-45), QQin (AE000253 )130-1345(b1560), b155988