TABLE 6.

SNPs in 28 clinical M. tuberculosis isolatesc

StrainSNP
213429043135319440904239424645845198GyrA-95aKatG-463a,b
37RvRv1551Rv155115511551Rv15511551cgg
54Rv15511551Rv155115511551Rv15511551cgg
98RvRv1551Rv155115511551Rv15511551ctg
107RvRv1551Rv155115511551Rv15511551ctg
123RvRv1551Rv155115511551Rv15511551ctg
131RvRvNDdRv155115511551Rv15511551cgg
140RvRv1551RvRv1551RvRvRvRvcgg
141RvRv1551RvRv15511551Rv1551Rvcgg
1551551155115511551155115511551Rv15511551cgg
159RvND1551Rv155115511551Rv15511551cgg
160Rv15511551RvRv15511551RvND1551cgg
1651551Rv1551RvRv15511551Rv15511551cgg
166RvRv1551RvRv15511551Rv1551Rvcgg
174Rv15511551Rv155115511551Rv1551Rvcgg
195RvRv1551Rv15511551RvRv1551Rvcgg
206RvRv15511551155115511551Rv15511551cgg
207RvRv1551Rv155115511551Rv15511551ctg
223Rv15511551Rv155115511551Rv15511551cgg
227RvRv1551Rv15511551NDRv15511551cgg
229NDRv1551Rv155115511551Rv1551Rvcgg
251RvRv1551RvRv15511551Rv1551Rvcgg
269NDRv1551Rv155115511551Rv15511551cgg
279RvRv1551Rv155115511551Rv15511551cgg
282RvRv1551RvRv15511551Rv1551Rvcgg
284RvRv1551RvRv15511551Rv15511551ctg
304RvRv1551Rv155115511551Rv1551NDND
306RvRv1551Rv155115511551Rv15511551ctg
313Rv15511551Rv155115511551Rv15511551cgg
CDC15511551155115511551155115511551155115511551cgg
H37RvRvRvRvRvRvRvRvRvRvRvcgg
  • a GyrA-95 and KatG-463 SNPs were initially identified by Sreevatsan et al. (34).

  • b actual sequence given because SNP is identical in CDC1551 and H37Rv.

  • c Rv, H37Rv; 1551, CDC1551.

  • d ND, Not done.