TABLE 2.

Length profile of CREE in three neisserial genomes

Length (bp) and other parametersN. meningitidis Z2491N. meningitidis MC58N. gonorrhoeae FA1090
Copy (n)Internal CREE (n)Copy (n)Internal CREE (n)Copy (n)Internal CREE (n)
Length
    3481105
    341111
    3341155
    3291
    3251196
    3191155
    2661107
    2451
    2201156
    2191155
    21311551155
    2041105
    1991155
    1971155
    18511561156
    1821
    1712155
    1691
    1651106
    1592105 (1)
    15713
    15628204
    15512712019
    15481213
    15322
    1501
    1441
    14212
    1252
    116171
    1151105
    1111
    11011
    1081
    107262419
    106303017
    105162315
    10411
    1011
    981
    9712
    9622
    921
    871
    73221
    721
    71332
    7012
    6911
    2812
Length no.352619
Total copies2701026161024
No. of nonredundant copiesa26025598
% Nucleotide in genomeb1.671.550.59
  • a Nonredundant CREE are calculated by subtracting the number of internal CREE from the total number of CREE directly counted by the FINDPATTERNS analysis.

  • b The percentage of nucleotide in the nonredundant CREE in the total genome sequence.