TABLE 3

RNA-seq analysis of ΔsigT and gsrN++ during hyperosmotic stress

Gene nameAnnotated functiongsrN++/WTΔsigT/WT
log2 (fold)P valueFDRlog2 (fold)P valueFDR
gsrNCell cycle-regulated sRNA GsrN3.14<1 × 10−17<1 × 10−17−6.277.98 × 10−143.33 × 10−12
CCNA_00882Hypothetical protein2.75<1 × 10−17<1 × 10−17−5.82<1 × 10−17<1 × 10−17
CCNA_03694AcoR-family transcriptional regulator1.37<1 × 10−17<1 × 10−17−1.64<1 × 10−17<1 × 10−17
CCNA_00028aTonB-dependent receptor1.231.82 × 10−134.90 × 10−12−1.322.85 × 10−141.27 × 10−12
CCNA_03695aAldehyde dehydrogenase1.17<1 × 10−17<1 × 10−17−1.401.10 × 10−51.52 × 10−4
CCNA_03889Conserved hypothetical protein1.101.55 × 10−41.25 × 10−3−1.301.92× 10−127.13 × 10−11
CCNA_00709Hypothetical protein1.075.67 × 10−43.89 × 10−3−6.223.90 × 10−65.97 × 10−5
CCNA_01089Conserved hypothetical protein−1.001.11 × 10−164.12 × 10−151.185.44 × 10−132.10 × 10−11
CCNA_02051Imidazolonepropionase-related amidohydrolase−1.22<1 × 10−17<1 × 10−171.113.09 × 10−97.70 × 10−8
CCNA_01653Cyclophilin-type peptidylprolyl cis-trans isomerase−1.23<1 × 10−17<1 × 10−171.39<1 × 10−17<1 × 10−17
CCNA_00243Hypothetical protein−1.33<1 × 10−17<1 × 10−171.253.13 × 10−119.84 × 10−10
CCNA_03082Hypothetical protein−1.34<1 × 10−17<1 × 10−171.242.82 × 10−121.03 × 10−10
CCNA_01100Acylamino acid-releasing enzyme−1.55<1 × 10−17<1 × 10−171.169.52 × 10−102.56 × 10−8
CCNA_02174aMultidrug resistance efflux pump−1.55<1 × 10−17<1 × 10−172.32<1 × 10−17<1 × 10−17
CCNA_02935Methyl-accepting chemotaxis protein−1.66<1 × 10−17<1 × 10−172.12<1 × 10−17<1 × 10−17
CCNA_02172ABC-type transporter, permease component−1.72<1 × 10−17<1 × 10−172.37<1 × 10−17<1 × 10−17
CCNA_02173ABC transporter ATP-binding protein−1.79<1 × 10−17<1 × 10−172.29<1 × 10−17<1 × 10−17
CCNA_01247CESA-like glycosyltransferase−2.00<1 × 10−17<1 × 10−17−1.536.29 × 10−101.72 × 10−8
CCNA_02050Imidazolonepropionase-related amidohydrolase−2.10<1 × 10−17<1 × 10−171.292.91 × 10−86.51 × 10−7
CCNA_03687Carbonic anhydrase−2.24<1 × 10−17<1 × 10−171.99<1 × 10−17<1 × 10−17
  • a Genes also identified in Fig. 3.