TABLE 1

Twenty most differentially induced genes in SCFM2 shared by all three strains

GeneaLocus tagSynonymAvg fold change (log2)bLinear fold changelog cpmcProduct descriptionFunctional category
SMLT_13155Smlt27628.93487.911.35Methyl-accepting chemotaxis proteinRedox homeostasis
cysJSMLT_13160Smlt27638.40338.911.43Sulfite reductase flavodoxin-containing subunit alphaRedox homeostasis
SMLT_13565Smlt28527.81225.27.42Transmembrane efflux proteinPolyamine metabolism
SMLT_13560Smlt28517.00127.86.82Transmembrane efflux proteinPolyamine metabolism
SMLT_06015Smlt12384.8829.46.81LysE family transmembrane transporterAmino acid metabolism
narK2SMLT_13190Smlt27694.1417.710.35MFS transmembrane nitrite extrusion transporter proteinRedox homeostasis
SMLT_01605Smlt03394.0716.87.68Hypothetical proteinUnknown hypothetical
narlSMLT_13200Smlt27713.8814.79.89Respiratory nitrate reductase subunit gammaRedox homeostasis
SMLT_13195Smlt27703.7513.510.99Rotamase/peptidyl-prolyl cis-trans isomerase family proteinRedox homeostasis
narHSMLT_13210Smlt27733.7413.412.37Respiratory nitrate reductase subunitRedox homeostasis
SMLT_02710Smlt05673.6412.58.52d-Amino acid dehydrogenase small subunitPeptidoglycan
groESSMLT_20065Smlt42153.4811.210.08Cochaperonin GroESStress responses
kdpASMLT_01915Smlt04083.4811.15.97Potassium-transporting ATPase subunit AStress responses
alrSMLT_02715Smlt05683.4410.97.27Alanine racemasePeptidoglycan
kdpBSMLT_01910Smlt04073.3910.55.73Potassium-transporting ATPase subunit BStress responses
narGSMLT_13215Smlt27743.3510.213.25Respiratory nitrate reductase subunit alphaRedox homeostasis
SMLT_01125Smlt02393.3410.17.62Acyl coenzyme A dehydrogenaseAmino acid metabolism
bpoASMLT_17365Smlt36473.3310.07.97Peroxidase BpoAStress responses
SMLT_06485Smlt13503.259.58.24Outer membrane autotransporterAdhesion
SMLT_20625Smlt43303.249.59.594-Hydroxyphenylpyruvate dioxygenaseAmino acid metabolism
  • a —, gene name not established.

  • b Average fold change from all three strains for SCFM2 versus MOPS.

  • c cpm, counts per million.