Table 2

Genes carried by pBS32

QuadrantGenePutative functionbE valuea
QIzpdAUnknowne−5
QIzpdBUnknown1
QIzpdCRNase He−57
QIzpdDUnknown1
QIzpdEFAD-dependent thymidylate synthasee−91
QIzpdFUnknown1
QIzpdGDNA polymerase III alpha subunite−124
QIzpdHdUTPasee−8
QIzpdIUnknown1
QIzpdJUnknowne−4
QIzpdKUnknowne−3
QIzpdLGuanylate kinasee−28
QIzpdMCrossover junction endodeoxyribonucleasee−21
QIzpdNECF sigma factore−70
QIalfAActin-like segregation proteince−7
QIalfBDNA binding segregation proteind1
QIzpdOUnknown1
QIzpdPUnknown1
QIzpdQThymidine kinasee−16
QIzpdRUnknowne−34
QIrepNReplication initiator proteinee−16
QIzpaADNA gyrase/topoisomerase IV subunit Be−116
QIzpaBDNA gyrase/topoisomerase IV subunit Ae−157
QIzpaCAntirestriction proteine−68
QIzpaDUnknowne−12
QIzpaEUnknown1
QIzpaFRho N-terminal domain1
QIzpaGUnknowne−2
QIzpaHPemK domaine−14
QIzpaIUnknowne−5
QIIzpaJUnknowne−159
QIIzpaKTransposasee−28
QIIzpaLUnknowne−133
QIIzpaMUnknowne−15
QIIzpaNUnknowne−81
QIIzpaOPhage integrasee−165
QIIzpaPPhage site-specific recombinasee−70
QIIzpaQLysozyme M1 (1,4-beta-N-acetylmuramidase)e−43
QIIzpaRUnknowne−15
QIIzpaSUnknowne−33
QIIzpaTUnknowne−1
QIIzpaUPhage-related proteine−30
QIIzpaVPhage minor structural proteine−42
QIIzpaWPhage tail proteine−19
QIIzpaXPhage minor structural proteine−169
QIIzpaYPhage tail proteine−117
QIIzpaZPhage tail tape measure proteine−146
QIIzpbAPhage tail tape measure protein chaperonee−20
QIIzpbBPhage major tail protein, Phi13 familye−51
QIIIzpbCUnknowne−19
QIIIzpbDPhage protein HK97 gp10 familye−21
QIIIzpbEPhage head-tail adaptor proteine−16
QIIIzpbFPhage DNA packaging proteine−28
QIIIzpbGUnknown1
QIIIzpbHPhage major capsid proteine−96
QIIIzpbIPhage major capsid protein, protease domaine−78
QIIIzpbJPhage portal proteine−117
QIIIzpbKPhage terminase large subunite−177
QIIIzpbLPhage terminase small subunite−70
QIIIzpbMHoming restriction endonuclease domaine−26
QIIIzpbNUnknown1
QIIIrapPRap phosphatasefe−93
QIIIphrPPhr peptidefe−18
QIIIzpbOUnknowne−16
QIIIzpbPUnknown1
QIIIzpbQUnknown1
QIIIzpbRATP-dependent DNA ligasee−77
QIIIzpbSLysM domain proteine−29
QIIIzpbTUnknown1
QIIIzpbUUnknowne−17
QIIIzpbVPhage integrasee−93
QIIIzpbWHTH DNA binding domaine−17
QIIIzpbXUnknown1
QIIIzpbYUnknown1
QIIIzpbZNTP phosphohydrolase domaine−41
QIIIzpcAUnknowne−21
QIIIzpcBUnknowne−53
QIIIzpcCUnknowne−40
QIVzpcDUnknowne−12
QIVzpcEUnknown1
QIVzpcFUnknowne−89
QIVzpcGNucleoside 2-deoxyribosyltransferasee−56
QIVzpcHUnknowne−4
QIVzpcIUnknown1
QIVzpcJATP/GTP binding protein, phage relatede−68
QIVzpcKRibonucleoside-diphosphate reductase alphae−127
QIVzpcLRibonucleotide-diphosphate reductase betae−85
QIVzpcMShort-chain flavodoxine−14
QIVzpcNUnknown1
QIVzpcOUnknowne−13
QIVzpcPUnknowne−6
QIVzpcQUnknowne−26
QIVzpcRUnknowne−17
QIVzpcSReplicative DNA helicase, phage relatede−99
QIVzpcTDNA primasee−56
QIVzpcUUnknown1
QIVzpcVSingle-stranded-DNA exonucleasee−84
QIVzpcWHTH DNA binding proteine−25
QIVzpcXNucleoside 2-deoxyribosyltransferasee−21
QIVzpcYThioredoxine−8
QIVzpcZHydrolasee−8
QIVcomICompetence inhibitore−7
  • a E values were given for the closest homolog outside a Bacillus subtilis species. A value of 1 was assigned if there was no homolog identified outside a Bacillus subtilis species.

  • b FAD, flavin adenine dinucleotide; ECF, extracytoplasmic function sigma factor; HTH, helix-turn-helix; NTP, nucleoside triphosphate.

  • c See reference 34.

  • d See reference 56.

  • e See reference 33.

  • f See reference 36.