TABLE 3

Factors exhibiting at least a 3-log increase in abundance from chicken cecal samples relative to the input

LocusAnnotation/predicted functionaFitness ratiob
CJJ81176_0636macB macrolide-specific efflux protein137,828.30
CJJ81176_1116pyrB aspartate carbamoyltransferase catalytic subunit113,410.73
CJJ81176_0372trpB tryptophan synthase subunit beta87,386.48
CJJ81176_0159Hypothetical protein47,536.15
CJJ81176_1393PurB-2 adenylosuccinate lyase43,154.53
CJJ81176_0043exsB protein ExsB34,172.52
CJJ81176_1608Hypothetical protein30,149.72
CJJ81176_1344Hypothetical protein27,510.78
CJJ81176_0041Membrane protein, putative, degenerate27,237.86
CJJ81176_0015leuC isopropylmalate isomerase large subunit22,670.49
CJJ81176_0190Tetrapyrrole methylase family protein15,887.70
CJJ81176_0626Hypothetical protein6,533.57
CJJ81176_1668eno phosphopyruvate hydratase6,111.82
CJJ81176_1655Thiredoxin-like protein5,811.00
CJJ81176_1164waaF ADP-heptose LPS heptosyltransferase II5,388.21
CJJ81176_1008Hypothetical protein5,142.55
CJJ81176_0437Hypothetical protein4,427.12
CJJ81176_1325Formyl transferase domain-containing protein4,020.13
CJJ81176_0738Transthyretin-like protein3,743.10
CJJ81176_0863psd phosphatidylserine decarboxylase3,261.48
CJJ81176_1527Hypothetical protein3,023.00
CJJ81176_0973Peptidyl-arginine deiminase family protein2,437.90
CJJ81176_0503nusG transcription antitermination protein2,430.53
CJJ81176_0402Hypothetical protein1,963.88
CJJ81176_0363ydfJ inner membrane metabolite transport protein1,635.86
CJJ81176_1552nuoM NADH-quinone oxidoreductase, M subunit1,633.78
CJJ81176_1553nuoL NADH dehydrogenase subunit L1,633.78
CJJ81176_0588Hypothetical protein1,313.33
CJJ81176_1447yliG putative tRNA modifying protein1,309.45
CJJ81176_1188SMR family multidrug efflux pump1,244.10
CJJ81176_0815Hypothetical protein1,242.03
CJJ81176_0072Hypothetical protein1,216.87
CJJ81176_1270Hypothetical protein1,142.36
CJJ81176_1521galU UTP-glucose-1-phosphate uridylyltransferase1,119.73
CJJ81176_1311Aminotransferase1,098.35
CJJ81176_0163Inositol monophosphatase family protein1,032.00
CJJ81176_1700rpsS 30S ribosomal protein S191,016.91
CJJ81176_0576efp elongation factor P1,012.63
  • a LPS, lipopolysaccharide; SMR, small multidrug resistance.

  • b Fitness ratio data were calculated by dividing normalized sequence abundance in output by normalized input abundance