TABLE 2

S. aureus isolate sources, phenotypes, and genome sequences for clinical isolates characterized from presenting patients

IDPatient sourceSite of isolationVancomycin findingNo. of genome readsGenome coverageMLSTSRA accession no.
MIC (μg/ml)Phenotype
CI1Respiratory infectionCystic fibrosis sputum2.0VSSA157,8978.86×ST8aSRX282043
CI2Soft-tissue infectionButtocks2.0VSSA229,03813.36×ST8aSRX282049
CI3Respiratory infectionMinibronchoalveolar lavage specimen2.0VSSA405,58321.94×ST105aSRX282051
CI4Soft tissue infectionAbdominal2.0VSSA282,74915.18×ST5aSRX282052
CI5Respiratory infectionEndotracheal aspirate2.0VSSA346,92018.70×ST105aSRX282055
CI6Soft tissue infectionAbdomen2.0VSSA2,511,097137.53×ST5aSRX282056
CI7Synovial fluidKnee1.5VSSA4,198,318220.37×ST105bSRX374117
CI8Respiratory infectionSputum3.0VISA1,100,69285.95×ST8bSRX381343
CI9Synovial fluidKnee3.0VISA901,94070.20×ST5bSRX381344
CI10BacteremiaCatheter tip3.0VISA616,11699.26×ST5bSRX381345
CI11Respiratory infectionCystic fibrosis sputum3.0VISA455,32765.98×ST225bSRX382695
  • a Reported by Ion Torrent.

  • b Determined from sequence similarity.