TABLE 2.

Complex repetitive sequences

Sequence groupSize (bp)Copy no.% Identity
Gene, operon, and/or region
    amoCAB, ORF4 and ORF54,8332>99
    hao, ORF, c554 and cm5524,3032>99
    hao, ORF, c5543,6011>99
    tufB1,1932>99
    aat,′ ORF, ppsA, ORF, ORF, glnS-lysU7,5102100
IS elements
    ISne1 (single transposase, several strong database hits)∼1,25027>95
    ISne2 (single transposase, strong hits to N and C terminus)∼1,01216>97
    ISne3 (two transposases, similar to IS401)a∼1,31613>98
    ISne4 (two transposases, several weak hits to both)∼84310>98
    ISne5 (two transposases, similar to ISne4)∼8159>98
    ISne6 (single transposase, several strong database hits)∼1,0005>98
    ISne7 (single transposase, few weak database hits)1,0503>99
    ISne8 (single transposase, several strong database hits)2,0262>99
  • a Burkholderia cepacia.