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mass spectrometry

  • Distinct Modified Nucleosides in tRNA<sup>Trp</sup> from the Hyperthermophilic Archaeon <span class="named-content genus-species" id="named-content-1">Thermococcus kodakarensis</span> and Requirement of tRNA m<sup>2</sup>G10/m<sup>2</sup><sub>2</sub>G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures
    Research Article
    Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m22G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures

    Thermococcus kodakarensis is a hyperthermophilic archaeon that can grow at 60 to 100°C. The sequence of tRNATrp from this archaeon was determined by liquid chromatography/mass spectrometry. Fifteen types of modified nucleoside were observed at 21 positions, including 5 modifications at novel positions; in addition, methylwyosine at position 37 was newly...

    Akira Hirata, Takeo Suzuki, Tomoko Nagano, Daishiro Fujii, Mizuki Okamoto, Manaka Sora, Todd M. Lowe, Tamotsu Kanai, Haruyuki Atomi, Tsutomu Suzuki, Hiroyuki Hori
  • Molecular Basis of Unexpected Specificity of ABC Transporter-Associated Substrate-Binding Protein DppA from <span class="named-content genus-species" id="named-content-1">Helicobacter pylori</span>
    Research Article
    Molecular Basis of Unexpected Specificity of ABC Transporter-Associated Substrate-Binding Protein DppA from Helicobacter pylori

    The World Health Organization listed Helicobacter pylori as a high-priority pathogen for antibiotic development. The potential of using peptide transporters in drug design is well recognized. We discovered that the substrate-binding protein of the ABC transporter for peptides, termed dipeptide permease, is an unusual member of its family in that it directly binds...

    Mohammad M. Rahman, Mayra A. Machuca, Mohammad F. Khan, Christopher K. Barlow, Ralf B. Schittenhelm, Anna Roujeinikova
  • Global Lysine Acetylation in <em>Escherichia coli</em> Results from Growth Conditions That Favor Acetate Fermentation
    Research Article
    Global Lysine Acetylation in Escherichia coli Results from Growth Conditions That Favor Acetate Fermentation

    Bacteria alter their metabolism in response to nutrient availability, growth conditions, and environmental stresses using a number of different mechanisms. One is lysine acetylation, a posttranslational modification known to target many metabolic enzymes. However, little is known about this regulatory mode. We investigated the factors inducing changes in lysine acetylation by comparing growth on glucose and xylose. We found that the...

    Birgit Schilling, Nathan Basisty, David G. Christensen, Dylan Sorensen, James S. Orr, Alan J. Wolfe, Christopher V. Rao
  • Disrupted Synthesis of a Di-<em>N</em>-acetylated Sugar Perturbs Mature Glycoform Structure and Microheterogeneity in the <em>O</em>-Linked Protein Glycosylation System of <span class="named-content genus-species" id="named-content-1">Neisseria elongata</span> subsp. <em>glycolytica</em>
    Research Article
    Disrupted Synthesis of a Di-N-acetylated Sugar Perturbs Mature Glycoform Structure and Microheterogeneity in the O-Linked Protein Glycosylation System of Neisseria elongata subsp. glycolytica
    Nelson Wang, Jan Haug Anonsen, Raimonda Viburiene, Joseph S. Lam, Åshild Vik, Michael Koomey
  • High-Resolution Analysis of the Peptidoglycan Composition in <span class="named-content genus-species" id="named-content-1">Streptomyces coelicolor</span>
    Research Article
    High-Resolution Analysis of the Peptidoglycan Composition in Streptomyces coelicolor

    Streptomycetes are bacteria with a complex lifestyle and are model organisms for bacterial multicellularity. From a single spore, a large multigenomic multicellular mycelium is formed, which differentiates to form spores. Programmed cell death is an important event during the onset of morphological differentiation. In this work, we provide new insights into the changes in the peptidoglycan composition and over time, highlighting changes...

    Lizah T. van der Aart, Gerwin K. Spijksma, Amy Harms, Waldemar Vollmer, Thomas Hankemeier, Gilles P. van Wezel
  • Minireview
    Regulation, Function, and Detection of Protein Acetylation in Bacteria
    Valerie J. Carabetta, Ileana M. Cristea
  • Research Article | Spotlight
    The Variable Internal Structure of the Mycoplasma penetrans Attachment Organelle Revealed by Biochemical and Microscopic Analyses: Implications for Attachment Organelle Mechanism and Evolution
    Steven L. Distelhorst, Dominika A. Jurkovic, Jian Shi, Grant J. Jensen, Mitchell F. Balish
  • ENZYMES AND PROTEINS
    Affinity Isolation and I-DIRT Mass Spectrometric Analysis of the Escherichia coli O157:H7 Sakai RNA Polymerase Complex
    David J. Lee, Stephen J. W. Busby, Lars F. Westblade, Brian T. Chait
  • PHYSIOLOGY AND METABOLISM
    Pathway Confirmation and Flux Analysis of Central Metabolic Pathways in Desulfovibrio vulgaris Hildenborough using Gas Chromatography-Mass Spectrometry and Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry
    Yinjie Tang, Francesco Pingitore, Aindrila Mukhopadhyay, Richard Phan, Terry C. Hazen, Jay D. Keasling
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