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small RNA

  • Open Access
    Cryptic-Prophage-Encoded Small Protein DicB Protects <em>Escherichia coli</em> from Phage Infection by Inhibiting Inner Membrane Receptor Proteins
    Research Article
    Cryptic-Prophage-Encoded Small Protein DicB Protects Escherichia coli from Phage Infection by Inhibiting Inner Membrane Receptor Proteins

    Temperate bacteriophages can integrate their genomes into the bacterial host chromosome and exist as prophages whose gene products play key roles in bacterial fitness and interactions with eukaryotic host organisms. Most bacterial chromosomes contain “cryptic” prophages that have lost genes required for production of phage progeny but retain genes of unknown function that may be important for regulating bacterial host physiology. This...

    Preethi T. Ragunathan, Carin K. Vanderpool
  • A CsrA-Binding, <em>trans</em>-Acting sRNA of <em>Coxiella burnetii</em> Is Necessary for Optimal Intracellular Growth and Vacuole Formation during Early Infection of Host Cells
    Research Article
    A CsrA-Binding, trans-Acting sRNA of Coxiella burnetii Is Necessary for Optimal Intracellular Growth and Vacuole Formation during Early Infection of Host Cells

    Regulation of metabolism and virulence in C. burnetii is not well understood. Here, we show that C. burnetii small RNA 12 (CbsR12) is highly transcribed in the metabolically active large-cell variant compared to the nonreplicative small-cell variant. We show that CbsR12 directly regulates several...

    Shaun Wachter, Matteo Bonazzi, Kyle Shifflett, Abraham S. Moses, Rahul Raghavan, Michael F. Minnick
  • Coherent Feedforward Regulation of Gene Expression by <span class="named-content genus-species" id="named-content-1">Caulobacter</span> σ<sup>T</sup> and GsrN during Hyperosmotic Stress
    Research Article
    Coherent Feedforward Regulation of Gene Expression by Caulobacter σT and GsrN during Hyperosmotic Stress

    Bacteria inhabit diverse niches and must adapt their physiology to constant environmental fluctuations. A major response to environmental perturbation is to change gene expression. Caulobacter and other alphaproteobacteria initiate a complex gene expression program known as the general stress response (GSR) under conditions including oxidative stress, osmotic stress,...

    Matthew Z. Tien, Benjamin J. Stein, Sean Crosson
  • Open Access
    Research Article
    Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii
    Diego Rivera Gelsinger, Jocelyne DiRuggiero
  • Research Article | Spotlight
    DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP
    Mary E. Girard, Saumya Gopalkrishnan, Elicia D. Grace, Jennifer A. Halliday, Richard L. Gourse, Christophe Herman
  • Research Article
    Regulation of Polyhydroxybutyrate Accumulation in Sinorhizobium meliloti by the Trans-Encoded Small RNA MmgR
    Antonio Lagares, Germán Ceizel Borella, Uwe Linne, Anke Becker, Claudio Valverde
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